X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.2293Ratio of protein:reservoir = 1:0.2 Reservoir solution; 20% PEG 8000, 0.2 M sodium chloride, 0.1 M Sodium Phosphate/Citric Acid, pH 4.2
Crystal Properties
Matthews coefficientSolvent content
3.160.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.465α = 90
b = 97.192β = 90
c = 97.691γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2015-02-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.979500SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8568.999.70.09111.36.751361
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.8999.11.3411.25.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4Y88 4Y8A1.8568.948753254999.60.18710.18570.2131RANDOM33.952
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.86-1.010.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.969
r_dihedral_angle_4_deg14.642
r_dihedral_angle_3_deg10.894
r_dihedral_angle_1_deg6.093
r_mcangle_it2.083
r_mcbond_it1.507
r_mcbond_other1.507
r_angle_refined_deg1.23
r_angle_other_deg0.95
r_chiral_restr0.074
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.969
r_dihedral_angle_4_deg14.642
r_dihedral_angle_3_deg10.894
r_dihedral_angle_1_deg6.093
r_mcangle_it2.083
r_mcbond_it1.507
r_mcbond_other1.507
r_angle_refined_deg1.23
r_angle_other_deg0.95
r_chiral_restr0.074
r_bond_refined_d0.008
r_gen_planes_refined0.006
r_bond_other_d0.004
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3371
Nucleic Acid Atoms
Solvent Atoms205
Heterogen Atoms7

Software

Software
Software NamePurpose
Aimlessdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction