☰ Navigation Tabs
Structural mechanism of hormone release in thyroxine binding globulin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 290 PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.45 44.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.98 α = 90 b = 56.07 β = 90 c = 173.36 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2014-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.987 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 26.57 97.98 3.5 3.2 52812
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.58 26.57 52812 2820 97.98 0.20592 0.20466 0.2142 0.22924 0.2363 RANDOM 16.006
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.04 -1.16 -1.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.366 r_dihedral_angle_3_deg 12.57 r_dihedral_angle_4_deg 10.143 r_dihedral_angle_1_deg 6.301 r_long_range_B_refined 5.213 r_long_range_B_other 5.21 r_scangle_other 3.387 r_scbond_it 2.2 r_scbond_other 2.2 r_angle_refined_deg 2.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.366 r_dihedral_angle_3_deg 12.57 r_dihedral_angle_4_deg 10.143 r_dihedral_angle_1_deg 6.301 r_long_range_B_refined 5.213 r_long_range_B_other 5.21 r_scangle_other 3.387 r_scbond_it 2.2 r_scbond_other 2.2 r_angle_refined_deg 2.199 r_mcangle_other 1.981 r_mcangle_it 1.98 r_mcbond_it 1.303 r_mcbond_other 1.298 r_angle_other_deg 0.978 r_chiral_restr 0.15 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2922 Nucleic Acid Atoms Solvent Atoms 197 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling PHASER phasing