4YE0

Stress-induced protein 1 truncation mutant (43 - 140) from Caenorhabditis elegans


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.929333 mM CAPS, 17 mM BisTRIS, 17 mM ammoniumsulfate, 10% pentaerythritol ethoxylate
Crystal Properties
Matthews coefficientSolvent content
2.2946.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.39α = 90
b = 50.82β = 90
c = 130.17γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2012-07-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15099.70.0616.35.31475414754
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.299.70.5272.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.114.951394773499.490.231710.230070.25948RANDOM61.484
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.330.310.02
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free33.514
r_dihedral_angle_2_deg32.488
r_dihedral_angle_4_deg19.752
r_dihedral_angle_3_deg18.611
r_sphericity_bonded7.673
r_dihedral_angle_1_deg6.176
r_angle_refined_deg1.08
r_rigid_bond_restr1.063
r_angle_other_deg0.675
r_chiral_restr0.063
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free33.514
r_dihedral_angle_2_deg32.488
r_dihedral_angle_4_deg19.752
r_dihedral_angle_3_deg18.611
r_sphericity_bonded7.673
r_dihedral_angle_1_deg6.176
r_angle_refined_deg1.08
r_rigid_bond_restr1.063
r_angle_other_deg0.675
r_chiral_restr0.063
r_bond_refined_d0.005
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1568
Nucleic Acid Atoms
Solvent Atoms37
Heterogen Atoms10

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
PHASERphasing