X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1RP0 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1EVAPORATION9.52951 M Sodium citrate tribasic 0.1 M CHES/ Sodium hydroxide pH 9.5
Crystal Properties
Matthews coefficientSolvent content
2.4549.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 101.302α = 90
b = 101.302β = 90
c = 204.309γ = 120
Symmetry
Space GroupP 31

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152013-10-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.9791APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.15098.60.0490.04919.73.4136825

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1RP02.150128000677598.550.199810.198960.21597RANDOM46.153
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.660.831.66-5.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.289
r_dihedral_angle_4_deg15
r_dihedral_angle_3_deg13.882
r_dihedral_angle_1_deg5.706
r_long_range_B_refined5.561
r_long_range_B_other5.561
r_scangle_other4.328
r_angle_other_deg3.621
r_mcangle_it3.058
r_mcangle_other3.058
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.289
r_dihedral_angle_4_deg15
r_dihedral_angle_3_deg13.882
r_dihedral_angle_1_deg5.706
r_long_range_B_refined5.561
r_long_range_B_other5.561
r_scangle_other4.328
r_angle_other_deg3.621
r_mcangle_it3.058
r_mcangle_other3.058
r_scbond_it2.684
r_scbond_other2.684
r_mcbond_it2.074
r_mcbond_other2.074
r_angle_refined_deg1.251
r_chiral_restr0.067
r_gen_planes_other0.011
r_bond_refined_d0.007
r_gen_planes_refined0.005
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15499
Nucleic Acid Atoms
Solvent Atoms222
Heterogen Atoms320

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing