☰ Navigation Tabs
Crystal of NO66 in complex with Ni(II)and N-oxalylglycine (NOG)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 15%(v/v) ethanol, imidazole pH8.0, 0.2M magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.18 61.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.586 α = 90 b = 150.878 β = 91.32 c = 106.902 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9791 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.9 0.077 19.1 4.6 71939
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 100 0.496 3.5 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 38.89 66561 3562 97.32 0.23499 0.23286 0.27405 0.2829 RANDOM 37.376
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 -0.12 -1.04 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.611 r_dihedral_angle_4_deg 20.613 r_dihedral_angle_3_deg 19.179 r_dihedral_angle_1_deg 6.777 r_long_range_B_other 6.451 r_long_range_B_refined 6.45 r_scangle_other 4.34 r_mcangle_it 4.148 r_mcangle_other 4.147 r_angle_other_deg 3.616
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.611 r_dihedral_angle_4_deg 20.613 r_dihedral_angle_3_deg 19.179 r_dihedral_angle_1_deg 6.777 r_long_range_B_other 6.451 r_long_range_B_refined 6.45 r_scangle_other 4.34 r_mcangle_it 4.148 r_mcangle_other 4.147 r_angle_other_deg 3.616 r_scbond_it 2.7 r_scbond_other 2.695 r_mcbond_it 2.618 r_mcbond_other 2.618 r_angle_refined_deg 1.69 r_chiral_restr 0.091 r_bond_refined_d 0.014 r_gen_planes_other 0.009 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14636 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing Coot model building PHASER phasing