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Gamma-aminobutyric acid aminotransferase inactivated by (1S,3S)-3-amino-4-difluoromethylenyl-1-cyclopentanoic acid (CPP-115)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 298 0.1M ammonium acetate, 0.1M bis-tris (pH 5.5), 17% PEG 10,000
Crystal Properties Matthews coefficient Solvent content 2.54 51.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.496 α = 90 b = 226.924 β = 108.67 c = 71.436 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD RAYONIX MX-300 2013-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.99 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 53.96 99.9 5.1 3.8 254809
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.63 53.96 238799 12646 96.84 0.1778 0.17649 0.1863 0.20259 0.2103 RANDOM 19.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.171 r_dihedral_angle_4_deg 16.917 r_dihedral_angle_3_deg 14.657 r_dihedral_angle_1_deg 6.166 r_long_range_B_refined 5.302 r_long_range_B_other 5.302 r_scangle_other 4.118 r_scbond_it 2.803 r_scbond_other 2.803 r_mcangle_other 2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.171 r_dihedral_angle_4_deg 16.917 r_dihedral_angle_3_deg 14.657 r_dihedral_angle_1_deg 6.166 r_long_range_B_refined 5.302 r_long_range_B_other 5.302 r_scangle_other 4.118 r_scbond_it 2.803 r_scbond_other 2.803 r_mcangle_other 2.28 r_mcangle_it 2.276 r_angle_refined_deg 2.051 r_mcbond_it 1.672 r_mcbond_other 1.657 r_angle_other_deg 0.998 r_chiral_restr 0.141 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14594 Nucleic Acid Atoms Solvent Atoms 841 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PHENIX refinement Coot model building