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Endo-glucanase chimera C10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XZB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.4 291 25 mM 18-crown-6, 30% (w/v) PEG 4000, 0.1 M HEPES sodium salt, pH 7.4, 0.2 M calcium chloride.
Crystal Properties Matthews coefficient Solvent content 2.26 45.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.251 α = 90 b = 83.248 β = 90 c = 121.603 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2014-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL12B2 1.0 SPring-8 BL12B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 25 99.5 32.5 7.7 51327
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4XZB 1.5 25 46054 2478 94 0.1701 0.16851 0.1678 0.19998 0.1996 RANDOM 16.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 0.26 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.842 r_dihedral_angle_4_deg 14.84 r_dihedral_angle_3_deg 12.328 r_dihedral_angle_1_deg 6.181 r_long_range_B_refined 6.134 r_long_range_B_other 6.134 r_scangle_other 2.237 r_mcangle_it 1.609 r_mcangle_other 1.609 r_scbond_it 1.369
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.842 r_dihedral_angle_4_deg 14.84 r_dihedral_angle_3_deg 12.328 r_dihedral_angle_1_deg 6.181 r_long_range_B_refined 6.134 r_long_range_B_other 6.134 r_scangle_other 2.237 r_mcangle_it 1.609 r_mcangle_other 1.609 r_scbond_it 1.369 r_scbond_other 1.369 r_angle_refined_deg 1.337 r_angle_other_deg 1.32 r_mcbond_it 0.95 r_mcbond_other 0.941 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2430 Nucleic Acid Atoms Solvent Atoms 442 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement Coot data reduction HKL-2000 data scaling AMoRE phasing