☰ Navigation Tabs
Escherichia Coli Replication Terminator Protein (Tus) H114A mutant Complexed With DNA- TerA lock.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I05
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 8-12% (v/v) PEG 3350, 100 mM NaI, 50 mM Bis-Tris
Crystal Properties Matthews coefficient Solvent content 2.81 56.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.505 α = 90 b = 64.505 β = 90 c = 250.941 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2014-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95370 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 75 99.6 0.08 26.7 6.6 23147
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.43 100 0.856 2 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2I05 2.35 62.74 21819 1176 99.32 0.22211 0.21971 0.226 0.26567 0.234 RANDOM 61.033
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.62 1.62 -3.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.225 r_sphericity_bonded 35.878 r_dihedral_angle_4_deg 23.003 r_dihedral_angle_3_deg 20.343 r_long_range_B_refined 7.14 r_long_range_B_other 7.126 r_dihedral_angle_1_deg 6.915 r_scangle_other 4.456 r_mcangle_it 4.154 r_mcangle_other 4.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.225 r_sphericity_bonded 35.878 r_dihedral_angle_4_deg 23.003 r_dihedral_angle_3_deg 20.343 r_long_range_B_refined 7.14 r_long_range_B_other 7.126 r_dihedral_angle_1_deg 6.915 r_scangle_other 4.456 r_mcangle_it 4.154 r_mcangle_other 4.152 r_scbond_it 2.945 r_scbond_other 2.942 r_mcbond_other 2.692 r_mcbond_it 2.691 r_angle_refined_deg 1.709 r_angle_other_deg 1.325 r_chiral_restr 0.111 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2466 Nucleic Acid Atoms 592 Solvent Atoms 69 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing