☰ Navigation Tabs
The crystal structure of Campylobacter jejuni N-acetyltransferase PseH in complex with acetyl coenzyme A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XPK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 291 28% PEG 300, 10mM beta-mercaptoethanol, 0.1M phosphate-citrate, 10mM acetyl coenzyme A
Crystal Properties Matthews coefficient Solvent content 2.47 50.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.421 α = 90 b = 110.495 β = 90 c = 40.785 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2014-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.97933 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 98.2 0.078 12.5 6.1 14434
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 98.5 0.463 6.2 1421
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4XPK 1.95 30 13563 713 97.67 0.1898 0.1878 0.1943 0.2294 0.1969 RANDOM 29.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 2.1 -1.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.932 r_dihedral_angle_4_deg 24.85 r_dihedral_angle_3_deg 13.935 r_dihedral_angle_1_deg 5.991 r_angle_other_deg 4.023 r_scangle_it 3.662 r_scbond_it 2.229 r_angle_refined_deg 1.487 r_mcangle_it 1.438 r_mcbond_it 0.763
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.932 r_dihedral_angle_4_deg 24.85 r_dihedral_angle_3_deg 13.935 r_dihedral_angle_1_deg 5.991 r_angle_other_deg 4.023 r_scangle_it 3.662 r_scbond_it 2.229 r_angle_refined_deg 1.487 r_mcangle_it 1.438 r_mcbond_it 0.763 r_chiral_restr 0.089 r_bond_refined_d 0.014 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1182 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 51
Software Software Software Name Purpose HKL-2000 data reduction REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling PHASER phasing