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Structure of active-like neurotensin receptor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GRV PDB entry 4GRV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 293 16-24% PEG400, 75 mM HEPES, pH 7.0-8.0, 1.7 mM TCEP, 32 mM lithium citrate, 0.9 mM Neurotensin (8-13)
Crystal Properties Matthews coefficient Solvent content 2.98 58.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.07 α = 90 b = 88.11 β = 90 c = 161.29 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.0332 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 46 90.6 0.153 8.9 6.6 14628 61
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.1 86.7 0.711 1.5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 4GRV 2.9 45 13831 769 90.17 0.23386 0.23127 0.28126 0.268 RANDOM 71.923
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 -3.31 3.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.885 r_dihedral_angle_3_deg 15.038 r_dihedral_angle_4_deg 13.813 r_dihedral_angle_1_deg 5.194 r_long_range_B_other 4.6 r_long_range_B_refined 4.599 r_scangle_other 1.677 r_mcangle_other 1.583 r_mcangle_it 1.582 r_angle_refined_deg 1.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.885 r_dihedral_angle_3_deg 15.038 r_dihedral_angle_4_deg 13.813 r_dihedral_angle_1_deg 5.194 r_long_range_B_other 4.6 r_long_range_B_refined 4.599 r_scangle_other 1.677 r_mcangle_other 1.583 r_mcangle_it 1.582 r_angle_refined_deg 1.008 r_scbond_it 1.003 r_scbond_other 0.991 r_mcbond_it 0.918 r_mcbond_other 0.912 r_angle_other_deg 0.725 r_chiral_restr 0.056 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3724 Nucleic Acid Atoms Solvent Atoms 10 Heterogen Atoms 67
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing