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Crystal Structure of OP0595 complexed with AmpC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WZX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 293 PEG 2000 monomethylether,
NiCl2
Crystal Properties Matthews coefficient Solvent content 1.95 37.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.027 α = 90 b = 54.781 β = 90.8 c = 75.667 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2012-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 50 98.3 0.074 10.8 3.6 67982
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.68 1.74 92.5 0.564 3 6348
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2WZX 1.68 50 67948 3308 98.05 0.2134 0.2117 0.211 0.2478 0.2465 RANDOM 22.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 -0.24 -1.53 0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.705 r_dihedral_angle_4_deg 18.368 r_dihedral_angle_3_deg 13.76 r_dihedral_angle_1_deg 5.772 r_scangle_it 2.569 r_scbond_it 1.525 r_angle_refined_deg 1.165 r_mcangle_it 1.013 r_mcbond_it 0.545 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.705 r_dihedral_angle_4_deg 18.368 r_dihedral_angle_3_deg 13.76 r_dihedral_angle_1_deg 5.772 r_scangle_it 2.569 r_scbond_it 1.525 r_angle_refined_deg 1.165 r_mcangle_it 1.013 r_mcbond_it 0.545 r_chiral_restr 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5546 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction PDB_EXTRACT data extraction HKL-2000 data scaling MOLREP phasing