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Crystal structure of the 2nd SH3 domain from human CD2AP (CMS) in complex with a proline-rich peptide (aa 76-91) from human ARAP1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 0.1 M HEPES pH 7.5, 1.4 M tri-sodium citrate dehydrate
Crystal Properties Matthews coefficient Solvent content 1.74 29.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.59 α = 90 b = 44.59 β = 90 c = 32.94 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97625 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 44.59 99.9 2.24 7.2 8587
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.58 44.59 8587 432 99.89 0.16154 0.15966 0.1696 0.19993 0.2124 RANDOM 22.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -0.3 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.181 r_dihedral_angle_4_deg 23.369 r_dihedral_angle_3_deg 14.214 r_long_range_B_refined 7.033 r_long_range_B_other 6.943 r_dihedral_angle_1_deg 6.201 r_scangle_other 4.833 r_mcangle_other 4.058 r_mcangle_it 4.057 r_scbond_it 3.332
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.181 r_dihedral_angle_4_deg 23.369 r_dihedral_angle_3_deg 14.214 r_long_range_B_refined 7.033 r_long_range_B_other 6.943 r_dihedral_angle_1_deg 6.201 r_scangle_other 4.833 r_mcangle_other 4.058 r_mcangle_it 4.057 r_scbond_it 3.332 r_scbond_other 3.327 r_mcbond_it 2.531 r_mcbond_other 2.528 r_angle_refined_deg 2.057 r_angle_other_deg 0.935 r_chiral_restr 0.123 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 578 Nucleic Acid Atoms Solvent Atoms 68 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling MOSFLM data reduction PHASER phasing