X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.52911.8M sodium malonate pH 5.0, 0.1M sodium acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.6353.24

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 147.994α = 90
b = 147.994β = 90
c = 33.711γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray113CCDADSC QUANTUM 2102001-01-01MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.21.00000, 0.97937, 0.97918, 0.95370ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8746.899.591.9128807

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.8746.830761182899.590.15330.15140.1832RANDOM23.303
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.52-0.521.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.15
r_dihedral_angle_3_deg11.336
r_dihedral_angle_4_deg10.199
r_dihedral_angle_1_deg7.187
r_mcangle_it3.504
r_mcbond_other2.495
r_mcbond_it2.494
r_angle_refined_deg1.931
r_angle_other_deg1.32
r_chiral_restr0.124
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.15
r_dihedral_angle_3_deg11.336
r_dihedral_angle_4_deg10.199
r_dihedral_angle_1_deg7.187
r_mcangle_it3.504
r_mcbond_other2.495
r_mcbond_it2.494
r_angle_refined_deg1.931
r_angle_other_deg1.32
r_chiral_restr0.124
r_bond_refined_d0.02
r_gen_planes_refined0.011
r_bond_other_d0.007
r_gen_planes_other0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2462
Nucleic Acid Atoms
Solvent Atoms239
Heterogen Atoms30

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
Cootmodel building
SOLVEphasing
SCALEPACKdata scaling
HKL-2000data reduction