4WYL

Mutant K18E of 3D polymerase from Foot-and-Moth Disease Virus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP629330% PEG 4K, 0.2M Mg(CH3COO)2, 0.1M MES ph 6.0, 4% gamma-butyrolactone
Crystal Properties
Matthews coefficientSolvent content
2.3848.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.627α = 90
b = 91.627β = 90
c = 117.852γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2012-04-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.4SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1245.8199.90.06125.66.534625
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.1199.30.355.36.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT245.8132825174099.890.214980.213530.24258RANDOM23.469
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.40.4-0.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.913
r_dihedral_angle_4_deg12.46
r_dihedral_angle_3_deg11.602
r_dihedral_angle_1_deg4.513
r_long_range_B_refined1.901
r_long_range_B_other1.901
r_mcangle_it0.856
r_mcangle_other0.856
r_angle_refined_deg0.807
r_angle_other_deg0.655
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.913
r_dihedral_angle_4_deg12.46
r_dihedral_angle_3_deg11.602
r_dihedral_angle_1_deg4.513
r_long_range_B_refined1.901
r_long_range_B_other1.901
r_mcangle_it0.856
r_mcangle_other0.856
r_angle_refined_deg0.807
r_angle_other_deg0.655
r_scangle_other0.65
r_mcbond_it0.466
r_mcbond_other0.466
r_scbond_it0.359
r_scbond_other0.359
r_chiral_restr0.049
r_bond_refined_d0.004
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3770
Nucleic Acid Atoms
Solvent Atoms147
Heterogen Atoms23

Software

Software
Software NamePurpose
REFMACrefinement
SCALAdata scaling
XDSdata reduction