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UndA complexed with beta-hydroxydodecanoic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 0.1 M MES, 1.8 M ammonium sulfate, 0.2 mM iron(II) ammonium sulfate, pH 6.5-7.0
Crystal Properties Matthews coefficient Solvent content 2.96 58.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.41 α = 90 b = 73.99 β = 90 c = 142.51 γ = 90
Symmetry Space Group P 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2013-09-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 65.75 95.8 14.5 8.4 75678
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 70.9 1.1 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.7 65.75 71841 3839 95.57 0.13907 0.13671 0.18454 0.1863 RANDOM 30.927
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.43
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.039 r_dihedral_angle_2_deg 36.661 r_dihedral_angle_4_deg 19.573 r_rigid_bond_restr 16.554 r_sphericity_bonded 16.337 r_dihedral_angle_3_deg 12.078 r_long_range_B_refined 7.532 r_long_range_B_other 7.134 r_scangle_other 6.594 r_mcangle_other 5.889
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.039 r_dihedral_angle_2_deg 36.661 r_dihedral_angle_4_deg 19.573 r_rigid_bond_restr 16.554 r_sphericity_bonded 16.337 r_dihedral_angle_3_deg 12.078 r_long_range_B_refined 7.532 r_long_range_B_other 7.134 r_scangle_other 6.594 r_mcangle_other 5.889 r_mcangle_it 5.882 r_scbond_it 5.754 r_scbond_other 5.628 r_dihedral_angle_1_deg 5.26 r_mcbond_it 4.593 r_mcbond_other 4.581 r_angle_other_deg 3.578 r_angle_refined_deg 1.378 r_chiral_restr 0.089 r_bond_refined_d 0.012 r_gen_planes_other 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4162 Nucleic Acid Atoms Solvent Atoms 563 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PHASER phasing PHENIX refinement