☰ Navigation Tabs
Thiosulfate dehydrogenase (TsdA) from Allochromatium vinosum - "as isolated" form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.28 293.15 23.5% (w/v) PEG 3350
0.1 M Bis-Tris pH 6.28
0.2 M (NH4)2SO4
0.1 M NaI
Crystal Properties Matthews coefficient Solvent content 2.31 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.213 α = 90 b = 69.883 β = 129.25 c = 57.864 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100.15 PIXEL DECTRIS PILATUS 6M 2013-03-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 1.722 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 44.81 87 0.07 9.5 1.8 29056 16.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.06 70 0.28 3.76 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.98 44.81 29048 1439 87.29 0.1408 0.1382 0.1495 0.1896 0.1994 21.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.166 f_angle_d 1.578 f_chiral_restr 0.051 f_bond_d 0.014 f_plane_restr 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1707 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 94
Software Software Software Name Purpose XDS data reduction PHENIX phasing Coot model building PHENIX refinement XSCALE data scaling