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High pressure protein crystallography of hen egg white lysozyme at 280 MPa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 293 Sodium chloride
Crystal Properties Matthews coefficient Solvent content 2.02 39.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.023 α = 90 b = 78.023 β = 90 c = 38.031 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 210r 2013-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 0.75 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.6 51.5 6.2 16058
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 34.21 15164 794 99.58 0.15381 0.15176 0.1634 0.19306 0.2004 RANDOM 18.184
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.244 r_dihedral_angle_4_deg 22.113 r_dihedral_angle_3_deg 13.291 r_long_range_B_refined 7.181 r_long_range_B_other 6.932 r_dihedral_angle_1_deg 6.325 r_scangle_other 5.23 r_scbond_it 3.47 r_scbond_other 3.468 r_mcangle_other 2.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.244 r_dihedral_angle_4_deg 22.113 r_dihedral_angle_3_deg 13.291 r_long_range_B_refined 7.181 r_long_range_B_other 6.932 r_dihedral_angle_1_deg 6.325 r_scangle_other 5.23 r_scbond_it 3.47 r_scbond_other 3.468 r_mcangle_other 2.582 r_mcangle_it 2.567 r_angle_refined_deg 2.146 r_mcbond_it 1.761 r_mcbond_other 1.732 r_angle_other_deg 1.033 r_chiral_restr 0.159 r_bond_refined_d 0.024 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement