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A New Class of Peptidomimetics Targeting the Polo-box Domain of Polo-like kinase 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.5 293 0.1M Citric acid, 28% PEG8000
Crystal Properties Matthews coefficient Solvent content 2.1 41.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.76 α = 90 b = 57.76 β = 90 c = 137.568 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 270 2013-05-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 1.0000 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 99.9 8.8 16.4 6904
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.71 50 6519 340 99.91 0.1854 0.1822 0.1917 0.2454 0.1916 RANDOM 47.345
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.69 -1.69 3.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.625 r_dihedral_angle_3_deg 20.923 r_dihedral_angle_4_deg 18.809 r_dihedral_angle_1_deg 7.917 r_mcangle_it 5.456 r_mcbond_other 3.455 r_mcbond_it 3.453 r_angle_refined_deg 1.627 r_angle_other_deg 1.075 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.625 r_dihedral_angle_3_deg 20.923 r_dihedral_angle_4_deg 18.809 r_dihedral_angle_1_deg 7.917 r_mcangle_it 5.456 r_mcbond_other 3.455 r_mcbond_it 3.453 r_angle_refined_deg 1.627 r_angle_other_deg 1.075 r_chiral_restr 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1775 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 56
Software Software Software Name Purpose HKL-2000 data reduction ADSC data collection REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling PHASER phasing