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Calcium-Dependent Protein Kinase 1 from Toxoplasma gondii (TgCDPK1) in complex with inhibitor UW1613
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 28% PEG 3350, 250 mM ammonium citrate, 2 mM EDTA, 5 mM DTT, 2 mM UW1613
Crystal Properties Matthews coefficient Solvent content 2.12 42.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.69 α = 90 b = 73.18 β = 99.75 c = 66.77 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2014-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97946 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 48.93 96.9 0.157 0.062 0.996 8.2 7.2 20018
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 96.3 1.772 0.702 0.532 1.1 7.2 1928
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.3 48.93 19012 1005 96.98 0.2079 0.2058 0.2112 0.2481 0.2485 RANDOM 55.429
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.05 -0.36 0.08 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.891 r_dihedral_angle_4_deg 16.57 r_dihedral_angle_3_deg 15.899 r_dihedral_angle_1_deg 5.587 r_mcangle_it 4.444 r_mcbond_it 2.753 r_mcbond_other 2.743 r_angle_refined_deg 1.488 r_angle_other_deg 0.805 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.891 r_dihedral_angle_4_deg 16.57 r_dihedral_angle_3_deg 15.899 r_dihedral_angle_1_deg 5.587 r_mcangle_it 4.444 r_mcbond_it 2.753 r_mcbond_other 2.743 r_angle_refined_deg 1.488 r_angle_other_deg 0.805 r_chiral_restr 0.08 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3626 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 30
Software Software Software Name Purpose MOSFLM data reduction REFMAC refinement PDB_EXTRACT data extraction Aimless data scaling