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PDE4 complexed with inhibitor
Crystallization Crystal Properties Matthews coefficient Solvent content 2.74 55.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.232 α = 90 b = 113.545 β = 90 c = 160.535 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2007-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 92.45 93.1 0.109 8 4.36 70787
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.43 92.1 0.404 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 92.85 67220 3567 92.92 0.2466 0.24356 0.2443 0.30372 0.3034 RANDOM 45.532
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.46 -1.49 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.644 r_dihedral_angle_4_deg 17.751 r_dihedral_angle_3_deg 17.191 r_dihedral_angle_1_deg 4.925 r_scangle_it 1.862 r_angle_refined_deg 1.216 r_scbond_it 1.179 r_mcangle_it 1.06 r_mcbond_it 0.637 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.644 r_dihedral_angle_4_deg 17.751 r_dihedral_angle_3_deg 17.191 r_dihedral_angle_1_deg 4.925 r_scangle_it 1.862 r_angle_refined_deg 1.216 r_scbond_it 1.179 r_mcangle_it 1.06 r_mcbond_it 0.637 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.2 r_nbd_refined 0.199 r_xyhbond_nbd_refined 0.134 r_symmetry_hbond_refined 0.133 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10669 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement