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Crystal Structure of BMP-2-inducible kinase in complex with baricitinib
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 4M sodium chloride, 0.1M bis-Tris pH 5.5, freshly purified protein
Crystal Properties Matthews coefficient Solvent content 2.78 55.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.31 α = 90 b = 111.41 β = 90 c = 163.8 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 33 99.3 9.6 2.6 21713
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.14 2.2 99.7 2.1 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.14 92.12 20634 1078 99 0.18932 0.18718 0.1939 0.22949 0.2312 RANDOM 37.252
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 0.85 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.526 r_dihedral_angle_4_deg 17.489 r_dihedral_angle_3_deg 13.429 r_dihedral_angle_1_deg 6.431 r_long_range_B_refined 5.674 r_long_range_B_other 5.602 r_scangle_other 3.486 r_mcangle_it 2.897 r_mcangle_other 2.896 r_scbond_it 2.165
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.526 r_dihedral_angle_4_deg 17.489 r_dihedral_angle_3_deg 13.429 r_dihedral_angle_1_deg 6.431 r_long_range_B_refined 5.674 r_long_range_B_other 5.602 r_scangle_other 3.486 r_mcangle_it 2.897 r_mcangle_other 2.896 r_scbond_it 2.165 r_scbond_other 2.164 r_mcbond_it 1.802 r_mcbond_other 1.801 r_angle_refined_deg 1.451 r_angle_other_deg 0.818 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2279 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling PHASER phasing