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70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F1E PDB Entries 3F1E , 3F1F , 2WRI , 2WRJ experimental model PDB 3F1F PDB Entries 3F1E , 3F1F , 2WRI , 2WRJ experimental model PDB 2WRI PDB Entries 3F1E , 3F1F , 2WRI , 2WRJ experimental model PDB 2WRJ PDB Entries 3F1E , 3F1F , 2WRI , 2WRJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 2.9% PEG 20K, 2.8% PPG P400, 5.1% MME 550, KSCN 200 mM, TRIS ACETATE 100mM
Crystal Properties Matthews coefficient Solvent content 3.62 66.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 306.009 α = 90 b = 673.491 β = 92.69 c = 351.984 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2012-06-07 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.03322 APS 23-ID-D 2 SYNCHROTRON ALS BEAMLINE 12.3.1 1.116 ALS 12.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.497 351.598 770789 2605789 2 1.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB Entries 3F1E , 3F1F , 2WRI , 2WRJ 3.5 40 2 770789 2605789 38147 0.262 0.262 0.2699 0.309 0.3102 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation c_angle_deg 1.07 c_bond_d 0.042 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d
RMS Deviations Key Refinement Restraint Deviation c_angle_deg 1.07 c_bond_d 0.042 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot c_mcbond_it c_mcangle_it c_scbond_it c_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 24442 Nucleic Acid Atoms 34612 Solvent Atoms Heterogen Atoms 33
Software Software Software Name Purpose XDS data scaling PHASER phasing CNS refinement XDS data reduction SCALA data scaling