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Molecular architecture of the eukaryotic chaperonin TRiC/CCT derived by a combination of chemical crosslinking and mass-spectrometry, XL-MS
Crystallization Crystal Properties Matthews coefficient Solvent content 3.08 60.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 159.1 α = 85.23 b = 162.54 β = 81.15 c = 268.1 γ = 61.17
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MANUALLY PLACED THROUGHOUT 3.8 30 216914 209265 10463 91.56 0.2592 0.2568 0.2784 0.3046 0.3148 RANDOM 141.5706
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.326 r_dihedral_angle_3_deg 20.267 r_dihedral_angle_4_deg 16.48 r_dihedral_angle_1_deg 5.223 r_angle_refined_deg 1.068 r_scangle_it 0.578 r_scbond_it 0.311 r_mcangle_it 0.229 r_mcbond_it 0.119 r_chiral_restr 0.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.326 r_dihedral_angle_3_deg 20.267 r_dihedral_angle_4_deg 16.48 r_dihedral_angle_1_deg 5.223 r_angle_refined_deg 1.068 r_scangle_it 0.578 r_scbond_it 0.311 r_mcangle_it 0.229 r_mcbond_it 0.119 r_chiral_restr 0.066 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 59528 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 512
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction