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T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1JJ2 PDB ENTRY 1JJ2
Crystallization Crystal Properties Matthews coefficient Solvent content 3.11 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 320.19 α = 90 b = 289.25 β = 91.22 c = 535.04 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-08-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.52 40 99.3 0.13 8.8 3.7 1192534 -3 96.88
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.52 3.72 99.6 0.81 1.6 3.6
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1JJ2 3.52 19.998 1.99 1186656 9951 99.42 0.2163 0.2161 0.2369 0.2445 0.2629 108.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.7797 -13.5499 13.16 6.6885
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.426 f_angle_d 1.144 f_chiral_restr 0.075 f_bond_d 0.009 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17189 Nucleic Acid Atoms 66769 Solvent Atoms Heterogen Atoms 4
Software Software Software Name Purpose PHASER model building PHENIX refinement XDS data reduction XSCALE data scaling PHASER phasing