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Crystal structure of the E. coli ribosome bound to telithromycin.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3I1M PDB ENTRY 3I1M, 3I1N, 3I1O, 3I1P experimental model PDB 3I1N PDB ENTRY 3I1M, 3I1N, 3I1O, 3I1P experimental model PDB 3I1O PDB ENTRY 3I1M, 3I1N, 3I1O, 3I1P experimental model PDB 3I1P PDB ENTRY 3I1M, 3I1N, 3I1O, 3I1P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6.5 291 PEG8k, MPD, pH 6.5, microbatch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.34 63.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 210.759 α = 90 b = 433.272 β = 90 c = 618.863 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 100 91.2 0.083 15.2 2.5 801811 801811 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.31 81.1 0.455 1.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS PDB ENTRY 3I1M, 3I1N, 3I1O, 3I1P 3.2547 85.218 0.02 754750 754750 15234 85.76 0.1943 0.1933 0.2231 0.245 0.2653
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.2555 -12.542 9.4561
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.323 f_angle_d 0.923 f_chiral_restr 0.063 f_bond_d 0.006 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18554 Nucleic Acid Atoms 32895 Solvent Atoms 208 Heterogen Atoms 43
Software Software Software Name Purpose SCALEPACK data scaling PHENIX refinement PDB_EXTRACT data extraction PHENIX refinement