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Structural and functional characterization of a novel monotreme- specific protein from the milk of the platypus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.65 281 PROTEIN WAS 4.7 MG/ML AND SET UP IN 200 PLUS 200 NL DROPS AT 8C WITH: 48 MM NACL, 28.3% PEG 8K, 10% MALONATE-IMIDAZOLE-BORATE BUFFER AT PH 8.65.
Crystal Properties Matthews coefficient Solvent content 2.47 50.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.351 α = 90 b = 73.008 β = 90.05 c = 56.732 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADXV 2013-10-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 46.2 99.1 0.08 22.2 11.2 26295
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.08 97.8 0.74 2.7 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.97 57.27 24961 1328 98.87 0.17401 0.17196 0.1801 0.21148 0.2212 RANDOM 37.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.24 -1.04 1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.343 r_dihedral_angle_3_deg 14.634 r_dihedral_angle_4_deg 14.293 r_dihedral_angle_1_deg 5.026 r_mcangle_it 4.833 r_scbond_it 4.501 r_mcbond_it 3.902 r_mcbond_other 3.874 r_angle_refined_deg 1.576 r_angle_other_deg 0.881
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.343 r_dihedral_angle_3_deg 14.634 r_dihedral_angle_4_deg 14.293 r_dihedral_angle_1_deg 5.026 r_mcangle_it 4.833 r_scbond_it 4.501 r_mcbond_it 3.902 r_mcbond_other 3.874 r_angle_refined_deg 1.576 r_angle_other_deg 0.881 r_chiral_restr 0.103 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2721 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing