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SeMet structure of a novel carbohydrate binding module from glycoside hydrolase family 9 (Cel9A) from Ruminococcus flavefaciens FD-1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.2 M AMMONIUM ACETATE, 1.5 M K2HPO4, 1.5 M NAH2PO4 CRYO USED WAS PARATONE-N., pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.89 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.051 α = 90 b = 104.051 β = 90 c = 104.051 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 42.48 100 0.09 14.5 11.2 24839
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 100 1.5 1.3 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.6 42.48 22809 1653 98.5 0.11986 0.11747 0.1376 0.15221 0.1654 RANDOM 26.386
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.063 r_dihedral_angle_4_deg 37.546 r_sphericity_free 22.299 r_dihedral_angle_3_deg 13.577 r_sphericity_bonded 10.936 r_dihedral_angle_1_deg 6.649 r_long_range_B_refined 4.632 r_long_range_B_other 4.628 r_rigid_bond_restr 3.792 r_scangle_other 3.662
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.063 r_dihedral_angle_4_deg 37.546 r_sphericity_free 22.299 r_dihedral_angle_3_deg 13.577 r_sphericity_bonded 10.936 r_dihedral_angle_1_deg 6.649 r_long_range_B_refined 4.632 r_long_range_B_other 4.628 r_rigid_bond_restr 3.792 r_scangle_other 3.662 r_scbond_it 3.064 r_scbond_other 3.064 r_mcangle_other 2.756 r_mcangle_it 2.747 r_mcbond_it 1.998 r_mcbond_other 1.974 r_angle_refined_deg 1.713 r_angle_other_deg 0.833 r_chiral_restr 0.114 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1016 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 56
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling XDS data scaling SHELXDE phasing CCP4 phasing REFMAC refinement