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STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM VII - SOS COMPLEX - 2.2A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 200 MM AMMONIUM SULFATE 100 MM MES 6.5 35 % W/V PEP 629 20MM SOS
Crystal Properties Matthews coefficient Solvent content 2.7 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.63 α = 90 b = 69.63 β = 90 c = 195.148 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2014-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 97 100 0.16 13.4 7.1 25372 -3 26.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.2 65.58 24266 1030 99.97 0.19196 0.19007 0.23653 0.2118 RANDOM 39.04
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 1.19 -2.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.934 r_dihedral_angle_4_deg 22.521 r_dihedral_angle_3_deg 15.456 r_dihedral_angle_1_deg 6.581 r_mcangle_it 3.599 r_scbond_it 3.441 r_mcbond_other 2.224 r_mcbond_it 2.223 r_angle_refined_deg 1.674 r_angle_other_deg 0.864
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.934 r_dihedral_angle_4_deg 22.521 r_dihedral_angle_3_deg 15.456 r_dihedral_angle_1_deg 6.581 r_mcangle_it 3.599 r_scbond_it 3.441 r_mcbond_other 2.224 r_mcbond_it 2.223 r_angle_refined_deg 1.674 r_angle_other_deg 0.864 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2853 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement