4UZ1

STRUCTURE OF THE WNT DEACYLASE NOTUM - CRYSTAL FORM III - 1.4A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14.61.5 M AMMONIUM SULPHATE, 0.1 M SODIUM ACETATE PH 4.6
Crystal Properties
Matthews coefficientSolvent content
1.934

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.969α = 90
b = 69.843β = 90
c = 77.535γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PIXEL2012-12-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I03DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.477980.0514.13.563440-312.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONOTHERTHROUGHOUTNONE1.451.896207799597.390.144470.143870.18045RANDOM18.766
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.66-0.29-0.38
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free32.875
r_dihedral_angle_2_deg31.848
r_dihedral_angle_4_deg16.339
r_sphericity_bonded12.948
r_dihedral_angle_3_deg12.14
r_dihedral_angle_1_deg6.277
r_scbond_it4.622
r_rigid_bond_restr3.229
r_mcangle_it2.845
r_mcbond_it2.56
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free32.875
r_dihedral_angle_2_deg31.848
r_dihedral_angle_4_deg16.339
r_sphericity_bonded12.948
r_dihedral_angle_3_deg12.14
r_dihedral_angle_1_deg6.277
r_scbond_it4.622
r_rigid_bond_restr3.229
r_mcangle_it2.845
r_mcbond_it2.56
r_mcbond_other2.555
r_angle_refined_deg1.567
r_angle_other_deg0.877
r_chiral_restr0.102
r_bond_refined_d0.013
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2867
Nucleic Acid Atoms
Solvent Atoms286
Heterogen Atoms34

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling