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Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34, P21 native crystal
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 10-16% (W/V) PEG 6000, 12-22% (V/V) GLYCEROL, 0.1 M TRIS-HCL PH 8.5
Crystal Properties Matthews coefficient Solvent content 3.1 60
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.97 α = 90 b = 76.05 β = 99.12 c = 116.83 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 VERTICALLY BENDED MULTILAYER MIRRORS 2012-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 99.9 0.11 8.1 3.4 108802 14.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.9 0.38 3.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2 115.41 106463 2209 99.79 0.14732 0.14647 0.1557 0.18676 0.1917 THIN SHELLS 24.851
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.94 1.94 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.218 r_dihedral_angle_4_deg 16.629 r_dihedral_angle_3_deg 12.073 r_dihedral_angle_1_deg 7.44 r_long_range_B_refined 6.776 r_long_range_B_other 5.714 r_scangle_it 3.019 r_scangle_other 3.019 r_mcangle_it 2.583 r_mcangle_other 2.582
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.218 r_dihedral_angle_4_deg 16.629 r_dihedral_angle_3_deg 12.073 r_dihedral_angle_1_deg 7.44 r_long_range_B_refined 6.776 r_long_range_B_other 5.714 r_scangle_it 3.019 r_scangle_other 3.019 r_mcangle_it 2.583 r_mcangle_other 2.582 r_scbond_it 1.885 r_scbond_other 1.884 r_mcbond_it 1.671 r_mcbond_other 1.67 r_angle_refined_deg 1.534 r_angle_other_deg 0.949 r_symmetry_vdw_refined 0.304 r_nbd_refined 0.25 r_symmetry_vdw_other 0.214 r_nbtor_refined 0.171 r_nbd_other 0.164 r_xyhbond_nbd_refined 0.123 r_symmetry_hbond_refined 0.105 r_chiral_restr 0.09 r_nbtor_other 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_xyhbond_nbd_other 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9101 Nucleic Acid Atoms Solvent Atoms 1664 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling