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Structure of liprin-alpha3 in complex with mDia1 Diaphanous- inhibitory domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z2C PDB ENTRY 1Z2C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.2 M NACL, 0.1 M TRIS/HCL PH 8.0, 20% PEG6000
Crystal Properties Matthews coefficient Solvent content 2.68 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.09 α = 90 b = 49.381 β = 97.86 c = 106.37 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M MIRRORS TOROIDAL FOCUSSING 2013-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 105.37 99.7 0.07 9.37 3.13 75030 2 23.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.66 99.9 0.73 1.33 3.24
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Z2C 1.65 32.317 2 75028 3777 99.667 0.177 0.1755 0.1871 0.2101 0.2187 RANDOM 26.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.064 -0.136 2.16 -2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.109 r_dihedral_angle_4_deg 19.444 r_dihedral_angle_3_deg 13.749 r_scbond_it 8.871 r_scangle_it 8.458 r_dihedral_angle_1_deg 5.22 r_mcangle_it 4.505 r_mcbond_it 2.967 r_angle_refined_deg 2.005 r_angle_other_deg 1.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.109 r_dihedral_angle_4_deg 19.444 r_dihedral_angle_3_deg 13.749 r_scbond_it 8.871 r_scangle_it 8.458 r_dihedral_angle_1_deg 5.22 r_mcangle_it 4.505 r_mcbond_it 2.967 r_angle_refined_deg 2.005 r_angle_other_deg 1.316 r_mcbond_other 0.751 r_nbd_refined 0.308 r_nbd_other 0.295 r_xyhbond_nbd_refined 0.195 r_nbtor_refined 0.183 r_chiral_restr 0.111 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.007 r_gen_planes_other 0.005 r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3926 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction TRUNCATE data scaling PHASER phasing