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Structural Identification of the Vps18 beta-propeller reveals a critical role in the HOPS complex stability and function.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25 % (W/V) PEG 3350, 0.2 M (NH4)2SO4, 0.1 M BIS-TRIS, PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.26 45.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.25 α = 90 b = 77.534 β = 98.91 c = 84.508 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.14 63.12 99.8 0.11 11.3 4.2 39106 27
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.14 43.31 36420 2648 98.77 0.20431 0.20138 0.24445 0.2307 RANDOM 33.035
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.09 -0.96 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.042 r_dihedral_angle_4_deg 19.685 r_dihedral_angle_3_deg 14.744 r_dihedral_angle_1_deg 6.409 r_mcangle_it 2.356 r_angle_refined_deg 1.344 r_mcbond_it 1.331 r_mcbond_other 1.327 r_scbond_it 1.326 r_angle_other_deg 0.821
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.042 r_dihedral_angle_4_deg 19.685 r_dihedral_angle_3_deg 14.744 r_dihedral_angle_1_deg 6.409 r_mcangle_it 2.356 r_angle_refined_deg 1.344 r_mcbond_it 1.331 r_mcbond_other 1.327 r_scbond_it 1.326 r_angle_other_deg 0.821 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5197 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction