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Mtb TMK in complex with compound 23
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G3U PDB ENTRY 1G3U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP Well soln: 0.1M PCTP, pH6.8, 4.5M NaCl
Crystal Properties Matthews coefficient Solvent content 2.64 53.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.508 α = 90 b = 75.508 β = 90 c = 71.447 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU CCD MIRRORS 2010-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 71 99.1 0.08 12.3 5.1 31560 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.1 95.3 0.47 2.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1G3U 1.98 65.39 29826 1591 99.04 0.17968 0.17817 0.1847 0.20759 0.2129 RANDOM 29.771
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.2 0.41 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.502 r_dihedral_angle_4_deg 17.929 r_dihedral_angle_3_deg 12.912 r_dihedral_angle_1_deg 4.866 r_scangle_it 3.274 r_scbond_it 1.994 r_angle_refined_deg 1.375 r_mcangle_it 1.343 r_angle_other_deg 0.909 r_mcbond_it 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.502 r_dihedral_angle_4_deg 17.929 r_dihedral_angle_3_deg 12.912 r_dihedral_angle_1_deg 4.866 r_scangle_it 3.274 r_scbond_it 1.994 r_angle_refined_deg 1.375 r_mcangle_it 1.343 r_angle_other_deg 0.909 r_mcbond_it 0.73 r_mcbond_other 0.149 r_chiral_restr 0.068 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2722 Nucleic Acid Atoms Solvent Atoms 262 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing