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Characterization of a Novel Transaminase from Pseudomonas sp. Strain AAC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4UHM PDB ENTRY 4UHM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 PROTEIN WAS AT 10 MG/ML AND WAS SET UP IN 200 NL PLUS 200 NL DROPS AGAINST 2.5 M NACL, 20 MM ZINC ACETATE, 0.1 M IMIDAZOLE BUFFER AT PH 8
Crystal Properties Matthews coefficient Solvent content 2.72 54.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.912 α = 90 b = 119.686 β = 90 c = 134.257 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2013-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 44.7 100 0.27 13.3 14.7 25807
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.28 100 1.12 3.3 14.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4UHM 2.21 89.34 24514 1293 99.95 0.14716 0.14497 0.18843 0.1653 RANDOM 23.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.7 1.13 -1.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.738 r_dihedral_angle_4_deg 21.896 r_dihedral_angle_3_deg 15.702 r_dihedral_angle_1_deg 5.99 r_scbond_it 2.624 r_mcangle_it 2.051 r_angle_refined_deg 1.979 r_mcbond_it 1.385 r_mcbond_other 1.371 r_angle_other_deg 1.033
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.738 r_dihedral_angle_4_deg 21.896 r_dihedral_angle_3_deg 15.702 r_dihedral_angle_1_deg 5.99 r_scbond_it 2.624 r_mcangle_it 2.051 r_angle_refined_deg 1.979 r_mcbond_it 1.385 r_mcbond_other 1.371 r_angle_other_deg 1.033 r_chiral_restr 0.115 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3307 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing