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Crystal structure of human peroxisomal delta3,delta2, enoyl-CoA isomerase (ISO-ECI2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 295 100mM MES pH 6.5, 1M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.5 50.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.428 α = 90 b = 91.915 β = 90 c = 130.368 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-02-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.64 49.6 98.4 0.117 11.5 7.9 27223
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.64 2.73 87.3 1.222 1.4 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.64 75.12 25794 1365 98.36 0.19764 0.19432 0.2622 0.2503 RANDOM 79.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.34 9.93 -7.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.131 r_dihedral_angle_4_deg 21.143 r_dihedral_angle_3_deg 14.856 r_long_range_B_refined 13.854 r_long_range_B_other 13.854 r_scangle_other 11.224 r_mcangle_other 8.887 r_mcangle_it 8.885 r_scbond_it 7.434 r_scbond_other 7.434
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.131 r_dihedral_angle_4_deg 21.143 r_dihedral_angle_3_deg 14.856 r_long_range_B_refined 13.854 r_long_range_B_other 13.854 r_scangle_other 11.224 r_mcangle_other 8.887 r_mcangle_it 8.885 r_scbond_it 7.434 r_scbond_other 7.434 r_dihedral_angle_1_deg 6.346 r_mcbond_it 6.135 r_mcbond_other 6.12 r_angle_refined_deg 1.478 r_angle_other_deg 0.883 r_chiral_restr 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5743 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement