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Hexameric HIV-1 CA in complex with Nup153 peptide, P6 crystal form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3H47
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 290 30% v/v PEG 400, 0.1 M CHES
Crystal Properties Matthews coefficient Solvent content 2.54 51.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.469 α = 90 b = 91.469 β = 90 c = 57.001 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 35.67 95.1 0.109 0.066 0.996 7.3 3.2 24947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.81 95.8 0.942 0.581 0.392 1.6 3.2 1411
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3H47 1.77 35.67 24942 1200 94.34 0.1923 0.1913 0.2108 0.2089 RANDOM 24.339
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 -0.1 -0.2 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.392 r_dihedral_angle_4_deg 16.002 r_dihedral_angle_3_deg 10.909 r_dihedral_angle_1_deg 4.269 r_mcangle_it 3.094 r_mcbond_it 2.009 r_mcbond_other 2.004 r_angle_refined_deg 0.878 r_angle_other_deg 0.728 r_chiral_restr 0.051
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.392 r_dihedral_angle_4_deg 16.002 r_dihedral_angle_3_deg 10.909 r_dihedral_angle_1_deg 4.269 r_mcangle_it 3.094 r_mcbond_it 2.009 r_mcbond_other 2.004 r_angle_refined_deg 0.878 r_angle_other_deg 0.728 r_chiral_restr 0.051 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1672 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms
Software Software Software Name Purpose Aimless data scaling MOSFLM data reduction PDB_EXTRACT data extraction PHASER phasing REFMAC refinement