X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP291100 mM HEPES pH 7.5, 200 mM NH4 acetate, 25 % (w/v) PEG 3350, 1% (v/v) DMF
Crystal Properties
Matthews coefficientSolvent content
1.9838

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.287α = 90
b = 34.685β = 102.09
c = 84.735γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2012-07-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6582.8698.912.52.852893

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.6582.8650178270798.610.129680.126380.19293RANDOM28.016
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.480.47-0.59-0.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.642
r_sphericity_free29.918
r_dihedral_angle_4_deg17.772
r_sphericity_bonded15.549
r_dihedral_angle_3_deg13.671
r_scangle_other6.912
r_long_range_B_refined6.611
r_long_range_B_other6.448
r_scbond_it6.313
r_scbond_other6.312
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.642
r_sphericity_free29.918
r_dihedral_angle_4_deg17.772
r_sphericity_bonded15.549
r_dihedral_angle_3_deg13.671
r_scangle_other6.912
r_long_range_B_refined6.611
r_long_range_B_other6.448
r_scbond_it6.313
r_scbond_other6.312
r_dihedral_angle_1_deg5.741
r_rigid_bond_restr4.968
r_mcangle_other4.785
r_mcangle_it4.782
r_mcbond_it4.084
r_mcbond_other4.076
r_angle_refined_deg1.67
r_angle_other_deg0.846
r_chiral_restr0.108
r_bond_refined_d0.016
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3759
Nucleic Acid Atoms
Solvent Atoms295
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement