4TNM

Crystal structure of Arabidopsis importin-alpha3 armadillo repeat domain


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52930.2 M Mg-acetate, 0.1 M MES pH 6.5, 19% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.3948.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 127.518α = 90
b = 127.518β = 90
c = 89.782γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2012-09-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.976DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.969.6698.38.82.711858
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.93.0898.80.2972.62.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.969.661182656297.950.22070.21860.2626RANDOM106.386
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.780.390.78-2.52
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.393
r_dihedral_angle_3_deg14.128
r_dihedral_angle_4_deg11.666
r_dihedral_angle_1_deg4.679
r_mcangle_it2.15
r_mcbond_it1.251
r_mcbond_other1.251
r_angle_refined_deg0.78
r_angle_other_deg0.682
r_chiral_restr0.041
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.393
r_dihedral_angle_3_deg14.128
r_dihedral_angle_4_deg11.666
r_dihedral_angle_1_deg4.679
r_mcangle_it2.15
r_mcbond_it1.251
r_mcbond_other1.251
r_angle_refined_deg0.78
r_angle_other_deg0.682
r_chiral_restr0.041
r_bond_refined_d0.004
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3138
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
iMOSFLMdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction