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CRYSTAL STRUCTURE of OLD YELLOW ENZYME from CANDIDA MACEDONIENSIS AKU4588 COMPLEXED with P-HYDROXYBENZALDEHYDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OYA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 25%(V/V) PEG 3350, 100MM TRIS-HCL,
200MM AMMONIUM SULFATE, PH 8.0, VAPOR DIFFUSION, SITTING DROP,
TEMPERATURE 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.394 α = 90 b = 151.027 β = 90 c = 199.893 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.9 23 7.3 147656
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OYA 1.8 19.95 147411 7378 99.7 0.169 0.167 0.2397 0.205 0.2605 RANDOM 39.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.09 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.518 r_dihedral_angle_4_deg 19.61 r_dihedral_angle_3_deg 15.586 r_dihedral_angle_1_deg 6.495 r_angle_refined_deg 1.892 r_angle_other_deg 0.947 r_chiral_restr 0.124 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.518 r_dihedral_angle_4_deg 19.61 r_dihedral_angle_3_deg 15.586 r_dihedral_angle_1_deg 6.495 r_angle_refined_deg 1.892 r_angle_other_deg 0.947 r_chiral_restr 0.124 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12800 Nucleic Acid Atoms Solvent Atoms 1050 Heterogen Atoms 160
Software Software Software Name Purpose PHASER model building REFMAC refinement XDS data reduction XDS data scaling PHASER phasing