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Crystal Structure of human Tankyrase 2 in complex with PJ-34.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.2M NaCl, 0.1M Sodium, Hepes buffer at pH7.5, 12-15% iso-propanol
Crystal Properties Matthews coefficient Solvent content 2.16 42.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.759 α = 90 b = 79.308 β = 90 c = 153.324 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 mirrors 2009-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 19.81 83.2 0.049 23.69 5.25 82801 22.12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 34.2 0.463 1.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.7 19.81 81688 1003 83.16 0.17779 0.17722 0.1836 0.22695 0.2303 RANDOM 26.377
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.66 0.85 -1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.018 r_dihedral_angle_4_deg 18.2 r_dihedral_angle_3_deg 14.637 r_long_range_B_refined 7.681 r_long_range_B_other 7.388 r_dihedral_angle_1_deg 6.974 r_scangle_other 5.061 r_mcangle_it 3.373 r_mcangle_other 3.372 r_scbond_it 3.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.018 r_dihedral_angle_4_deg 18.2 r_dihedral_angle_3_deg 14.637 r_long_range_B_refined 7.681 r_long_range_B_other 7.388 r_dihedral_angle_1_deg 6.974 r_scangle_other 5.061 r_mcangle_it 3.373 r_mcangle_other 3.372 r_scbond_it 3.309 r_scbond_other 3.308 r_mcbond_it 2.298 r_mcbond_other 2.298 r_angle_refined_deg 1.881 r_angle_other_deg 0.886 r_chiral_restr 0.122 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6478 Nucleic Acid Atoms Solvent Atoms 762 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement XDS data reduction PDB_EXTRACT data extraction