X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4S38 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52930.1 M BIS-TRIS PROPANE, 20% PEG3350, 0.2 M Na2SO4, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.754.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 111.38α = 90
b = 62.6β = 127.33
c = 86.25γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELPSI PILATUS 6M2014-05-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SA1.0SLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.33098.90.03614.92.911607711480022
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.498.60.522

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4S381.310114799109059574099.20.112570.111420.13388RANDOM22.295
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.74-0.382.22-0.55
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free57.424
r_dihedral_angle_2_deg37.045
r_sphericity_bonded17.005
r_dihedral_angle_4_deg16.617
r_dihedral_angle_3_deg12.812
r_scangle_other8.67
r_long_range_B_refined7.754
r_long_range_B_other6.864
r_scbond_it6.56
r_scbond_other6.56
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free57.424
r_dihedral_angle_2_deg37.045
r_sphericity_bonded17.005
r_dihedral_angle_4_deg16.617
r_dihedral_angle_3_deg12.812
r_scangle_other8.67
r_long_range_B_refined7.754
r_long_range_B_other6.864
r_scbond_it6.56
r_scbond_other6.56
r_rigid_bond_restr6.385
r_dihedral_angle_1_deg5.648
r_mcangle_it3.517
r_mcangle_other3.516
r_mcbond_it2.944
r_mcbond_other2.907
r_angle_refined_deg2.838
r_angle_other_deg1.535
r_chiral_restr0.241
r_bond_refined_d0.027
r_gen_planes_refined0.012
r_gen_planes_other0.004
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3072
Nucleic Acid Atoms
Solvent Atoms461
Heterogen Atoms41

Software

Software
Software NamePurpose
XDSdata scaling
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling