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Shel_16390 protein, a putative SGNH hydrolase from Slackia heliotrinireducens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 289 0.1 M sodium acetate, 1.5 M lithium sulfate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.38 48.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.591 α = 90 b = 67.023 β = 90 c = 71.544 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9792 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 35.3 98.9 0.143 12.1 6.2 35098 35098 22.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 88.9 0.654 1.95 3.3 1544
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 35.3 33266 33266 1769 98.52 0.1195 0.1176 0.1326 0.1559 0.1688 RANDOM 19.369
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.85 -1.26 2.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.214 r_sphericity_free 27.833 r_dihedral_angle_4_deg 19.751 r_dihedral_angle_3_deg 12.967 r_sphericity_bonded 8.21 r_dihedral_angle_1_deg 5.383 r_rigid_bond_restr 3.23 r_mcangle_it 1.871 r_angle_refined_deg 1.538 r_mcbond_other 1.494
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.214 r_sphericity_free 27.833 r_dihedral_angle_4_deg 19.751 r_dihedral_angle_3_deg 12.967 r_sphericity_bonded 8.21 r_dihedral_angle_1_deg 5.383 r_rigid_bond_restr 3.23 r_mcangle_it 1.871 r_angle_refined_deg 1.538 r_mcbond_other 1.494 r_mcbond_it 1.492 r_angle_other_deg 0.82 r_chiral_restr 0.09 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1335 Nucleic Acid Atoms Solvent Atoms 200 Heterogen Atoms 9
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling SHELXCD phasing SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing HKL-3000 phasing