☰ Navigation Tabs
Structure of Uranotaenia sapphirina cypovirus (CPV17) polyhedrin at 100 K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 In vivo 7.5 301 CRYSTALS FORMED NATURALLY WITHIN THE CYTOPLASM AND WERE PURIFIED FROM CELLS, pH 7.5, In vivo, temperature 301K
Crystal Properties Matthews coefficient Solvent content 1.78 31.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.879 α = 90 b = 104.879 β = 90 c = 104.879 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2014-02-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 74 99.79 9903 9376 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 74.16 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 74 1.2 9376 9376 504 99.79 0.15054 0.14771 0.1585 0.19892 0.1993 RANDOM 23.242
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.316 r_dihedral_angle_4_deg 17.454 r_dihedral_angle_3_deg 14.402 r_dihedral_angle_1_deg 6.607 r_long_range_B_refined 5.532 r_long_range_B_other 5.356 r_scangle_other 3.332 r_mcangle_it 2.27 r_mcangle_other 2.269 r_scbond_it 2.153
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.316 r_dihedral_angle_4_deg 17.454 r_dihedral_angle_3_deg 14.402 r_dihedral_angle_1_deg 6.607 r_long_range_B_refined 5.532 r_long_range_B_other 5.356 r_scangle_other 3.332 r_mcangle_it 2.27 r_mcangle_other 2.269 r_scbond_it 2.153 r_scbond_other 2.152 r_angle_refined_deg 1.675 r_mcbond_it 1.416 r_mcbond_other 1.412 r_angle_other_deg 0.854 r_chiral_restr 0.094 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1881 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 32
Software Software Software Name Purpose DIALS data collection PHASER phasing REFMAC refinement DIALS data reduction DIALS data scaling