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Structure of three phase partition - treated lipase from Thermomyces lanuginosa in complex with lauric acid at 2.1 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4EA6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M HEPES, O.1M Nacl, 1.6M Ammonium sulphate , pH 7.5 , VAPOR DIFFUSION, HANGING DROP, temperature 298 K
Crystal Properties Matthews coefficient Solvent content 3.88 68.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.997 α = 90 b = 139.997 β = 90 c = 80.492 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARRESEARCH mirror 2012-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.97 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 98.2 0.086 35.3 98715 48974
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 98.6 0.443 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4EA6 2.1 50 48974 48974 2641 97.99 0.21113 0.20854 0.26043 0.245 RANDOM 45.898
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.72 0.86 1.72 -5.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.199 r_dihedral_angle_4_deg 21.426 r_dihedral_angle_3_deg 16.565 r_long_range_B_refined 8.501 r_long_range_B_other 8.501 r_dihedral_angle_1_deg 7.445 r_scangle_other 6.345 r_mcangle_it 5.839 r_mcangle_other 5.838 r_scbond_it 4.414
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.199 r_dihedral_angle_4_deg 21.426 r_dihedral_angle_3_deg 16.565 r_long_range_B_refined 8.501 r_long_range_B_other 8.501 r_dihedral_angle_1_deg 7.445 r_scangle_other 6.345 r_mcangle_it 5.839 r_mcangle_other 5.838 r_scbond_it 4.414 r_scbond_other 4.413 r_mcbond_other 4.204 r_mcbond_it 4.203 r_angle_refined_deg 1.908 r_angle_other_deg 0.925 r_chiral_restr 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4140 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 101
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement SCALEPACK data scaling