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Crystal Structure Analysis of the DNPA-bounded NUR77 Ligand binding Domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.2 277 PEG4000, Sodium citrate, Glycerol, pH 4.2, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.19 61.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.228 α = 90 b = 76.529 β = 90 c = 128.677 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2013-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.5418 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 97.08 19695 19120 -3 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 49.3 19695 19120 1040 97.08 0.2146 0.2146 0.2117 0.2137 0.2696 0.2702 RANDOM 47.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.22 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.531 r_dihedral_angle_3_deg 19.81 r_dihedral_angle_4_deg 17.917 r_mcangle_it 5.734 r_dihedral_angle_1_deg 5.481 r_mcbond_it 3.68 r_mcbond_other 3.67 r_angle_refined_deg 1.698 r_angle_other_deg 1.133 r_chiral_restr 0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.531 r_dihedral_angle_3_deg 19.81 r_dihedral_angle_4_deg 17.917 r_mcangle_it 5.734 r_dihedral_angle_1_deg 5.481 r_mcbond_it 3.68 r_mcbond_other 3.67 r_angle_refined_deg 1.698 r_angle_other_deg 1.133 r_chiral_restr 0.075 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.006 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3635 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 45
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling PHASES phasing