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Crystal Structure Analysis of the NUR77 Ligand Binding Domain, L437W,D594E mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.2 277 PEG4000, Sodium citrate, Glycerol, pH 4.2, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.2 61.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.266 α = 90 b = 76.893 β = 90 c = 128.518 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2013-09-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.5418 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 50 99.7 25108 25033 -3 -3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.49 49.38 25108 25033 1334 99.74 0.25283 0.24983 0.30895 0.2968 RANDOM 33.973
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.96 0.45 -1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.084 r_dihedral_angle_4_deg 23.676 r_dihedral_angle_3_deg 21.466 r_dihedral_angle_1_deg 5.321 r_mcangle_it 4.039 r_mcbond_it 2.649 r_mcbond_other 2.647 r_scbond_it 2.628 r_angle_refined_deg 1.829 r_angle_other_deg 1.397
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.084 r_dihedral_angle_4_deg 23.676 r_dihedral_angle_3_deg 21.466 r_dihedral_angle_1_deg 5.321 r_mcangle_it 4.039 r_mcbond_it 2.649 r_mcbond_other 2.647 r_scbond_it 2.628 r_angle_refined_deg 1.829 r_angle_other_deg 1.397 r_chiral_restr 0.096 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.007 r_gen_planes_other 0.007 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3609 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms 18
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection AUTOMAR data reduction PHASES phasing