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Crystal structure of carbohydrate transporter solute binding protein CAUR_1924 from Chloroflexus aurantiacus, Target EFI-511158, in complex with D-glucose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.5 294 PROTEIN (10 MM HEPES PH 7.5, 5 MM DTT, 10 MM D-ARABINOSE); RESERVOIR: 0.1 M CITRIC ACID:NAOH, PH 3.5, 25% PEG3350; CRYOPROTECTION: RESERVOIR SOLUTION; VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.95 36.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.037 α = 90 b = 51.426 β = 90 c = 140.125 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE MIRRORS 2014-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 50 99.1 0.071 18.2 9 60271 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 95.4 0.57 2.4 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 50 58388 1794 98.93 0.13031 0.12887 0.17653 0.1702 RANDOM 15.241
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.05 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.174 r_sphericity_free 25.272 r_dihedral_angle_4_deg 13.479 r_dihedral_angle_3_deg 13.049 r_sphericity_bonded 11.949 r_scbond_it 5.81 r_scbond_other 5.81 r_scangle_other 5.794 r_dihedral_angle_1_deg 5.664 r_long_range_B_refined 4.986
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.174 r_sphericity_free 25.272 r_dihedral_angle_4_deg 13.479 r_dihedral_angle_3_deg 13.049 r_sphericity_bonded 11.949 r_scbond_it 5.81 r_scbond_other 5.81 r_scangle_other 5.794 r_dihedral_angle_1_deg 5.664 r_long_range_B_refined 4.986 r_long_range_B_other 4.985 r_rigid_bond_restr 2.566 r_mcangle_other 2.545 r_mcangle_it 2.503 r_mcbond_it 2.282 r_mcbond_other 2.22 r_angle_refined_deg 1.508 r_angle_other_deg 0.864 r_chiral_restr 0.201 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2589 Nucleic Acid Atoms Solvent Atoms 452 Heterogen Atoms 25
Software Software Software Name Purpose SHELX model building ARP/wARP model building REFMAC refinement XDS data reduction SCALA data scaling SHELX phasing