Experiment: 4RNE

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7	298	MgCl2 20mM, SrCl2 80mM, CaCl2 40mM, SPM 4Cl 12mM, Sodium cacodylate 20mM, 35% MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
1.56	21.45

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 37.656	α = 90
b = 54.197	β = 90
c = 95.677	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 315		2007-02-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRL BEAMLINE BL9-1	0.979	SSRL	BL9-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.01	95.68	99.2			51294	51294

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.01	1.06	94.9				7088

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.01	28	48629	2606	99.11	0.10275	0.10185	0.11916	RANDOM	12.816

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.05			-0.08		0.13

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	24.249
r_sphericity_bonded	10.252
r_rigid_bond_restr	6.449
r_long_range_B_refined	3.041
r_long_range_B_other	2.32
r_scangle_other	1.759
r_angle_other_deg	1.747
r_angle_refined_deg	1.67
r_scbond_it	1.463
r_scbond_other	1.304

RMS Deviations
Key	Refinement Restraint Deviation
r_sphericity_free	24.249
r_sphericity_bonded	10.252
r_rigid_bond_restr	6.449
r_long_range_B_refined	3.041
r_long_range_B_other	2.32
r_scangle_other	1.759
r_angle_other_deg	1.747
r_angle_refined_deg	1.67
r_scbond_it	1.463
r_scbond_other	1.304
r_chiral_restr	0.1
r_gen_planes_refined	0.043
r_bond_refined_d	0.012
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms
Nucleic Acid Atoms	1032
Solvent Atoms	232
Heterogen Atoms	19

Software

Software
Software Name	Purpose
MOSFLM	data reduction
PHASER	phasing
REFMAC	refinement
SCALA	data scaling

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.