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AMPPCP-bound structure of human platelet phosphofructokinase in an R-state, crystal form II
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 292 0,1 M MES pH 6.0 23% v/v MPD, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.04 59.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.911 α = 90 b = 132.911 β = 90 c = 397.168 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2014-01-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.02 50 99.9 0.184 12.32 80705 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.02 3.2 99.6 0.011 2.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION 4WLO THROUGHOUT 3.02 46.9 80704 76555 4149 99.92 0.14834 0.14626 0.1428 0.1873 0.1867 RANDOM 78.049
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 15.38 15.38 -30.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.894 r_dihedral_angle_3_deg 16.429 r_dihedral_angle_4_deg 15.557 r_mcangle_it 10.039 r_dihedral_angle_1_deg 6.739 r_mcbond_it 6.628 r_mcbond_other 6.628 r_scbond_it 6.526 r_angle_refined_deg 1.494 r_angle_other_deg 1.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.894 r_dihedral_angle_3_deg 16.429 r_dihedral_angle_4_deg 15.557 r_mcangle_it 10.039 r_dihedral_angle_1_deg 6.739 r_mcbond_it 6.628 r_mcbond_other 6.628 r_scbond_it 6.526 r_angle_refined_deg 1.494 r_angle_other_deg 1.113 r_chiral_restr 0.077 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22328 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 159
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MxCuBE data collection