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Crystal structure of a DUF3836 family protein (BVU_1206) from Bacteroides vulgatus ATCC 8482 at 2.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 25.0% Glycerol 1.50M ammonium sulfate, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 4.91 74.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.08 α = 90 b = 98.08 β = 90 c = 89.24 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing) 2014-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 49.04 99.4 0.087 16.06 9.79 17436 -3 84.846
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.57 98.3 2.439 0.75 8.92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 49.04 17387 881 99.13 0.18 0.1768 0.1775 0.2444 0.2396 RANDOM 79.4772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -41.18 -41.18 82.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.512 r_dihedral_angle_4_deg 15.678 r_dihedral_angle_3_deg 13.753 r_mcangle_it 6.423 r_dihedral_angle_1_deg 6.113 r_mcbond_other 4.182 r_mcbond_it 4.181 r_angle_refined_deg 1.707 r_angle_other_deg 1.464 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.512 r_dihedral_angle_4_deg 15.678 r_dihedral_angle_3_deg 13.753 r_mcangle_it 6.423 r_dihedral_angle_1_deg 6.113 r_mcbond_other 4.182 r_mcbond_it 4.181 r_angle_refined_deg 1.707 r_angle_other_deg 1.464 r_chiral_restr 0.1 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1648 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction PHASER phasing XSCALE data scaling REFMAC refinement XDS data reduction